gb1 · Graph CNN
reference_gb1_gcn_plm_contiguousf1_20261104-181744
Metrics
| Set | mse | pearsonr | spearmanr | r2 | above_wt_n | above_wt_spearmanr | budget_to_max | hit_rate_at_10 | mean_at_10 | max_at_10 | precision_at_10 | tie_share_at_10 | captured_at_10 | hit_rate_at_50 | mean_at_50 | max_at_50 | precision_at_50 | tie_share_at_50 | captured_at_50 | hit_rate_at_100 | mean_at_100 | max_at_100 | precision_at_100 | tie_share_at_100 | captured_at_100 | hit_rate_at_1pct | mean_at_1pct | max_at_1pct | precision_at_1pct | tie_share_at_1pct | captured_at_1pct |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| train | 0.8206 | 0.9162 | 0.9164 | 0.8358 | 33066.0000 | 0.3570 | 6639.0000 | 1.0000 | 0.8006 | 1.0261 | 0.0000 | 0.0000 | 0.7732 | 0.9800 | 0.7429 | 1.2587 | 0.0000 | 0.0000 | 0.7848 | 0.9800 | 0.7598 | 1.4054 | 0.0000 | 0.0000 | 0.8011 | 0.9382 | 0.5902 | 1.5901 | 0.1215 | 0.0000 | 0.8410 |
| validation | 6.5750 | 0.2714 | 0.2307 | -0.2189 | 2092.0000 | 0.1928 | 4794.0000 | 0.0000 | -5.6560 | -2.9238 | 0.0000 | 0.0000 | -0.3531 | 0.1800 | -4.1640 | 0.9380 | 0.0000 | 0.0000 | -0.0873 | 0.2000 | -4.1266 | 1.3595 | 0.0000 | 0.0000 | -0.0819 | 0.2388 | -3.7423 | 1.6366 | 0.0199 | 0.0000 | -0.0098 |
| test | 2.0197 | 0.3076 | 0.3660 | -0.0009 | 5403.0000 | 0.0902 | 2904.0000 | 0.3000 | -0.2803 | 0.7883 | 0.0000 | 0.0000 | 0.3104 | 0.3400 | -0.2472 | 0.8043 | 0.0000 | 0.0000 | 0.3507 | 0.4200 | -0.2044 | 0.8606 | 0.0000 | 0.0000 | 0.3852 | 0.5025 | -0.1200 | 1.0909 | 0.0249 | 0.0000 | 0.4459 |
Loss per epoch
training
validation
Config
name: reference_gb1_gcn_plm_contiguousf1 task: dms data: dataset: gb1 encoding: one_hot,aa_index,plm,plm_sum split_dir: null graph_threshold: 7 split_scheme: contiguous split_fold: 1 model: name: gcn filters: - 128 - 128 - 128 - 128 - 128 hidden: - 100 dropout: 0.2 train: epochs: 300 batch_size: 32 learning_rate: 0.0001 patience: 15 min_delta: 1.0e-05 seed: 7