Protein Engineering

gb1 · Linear

reference_gb1_lr_plm_contiguousf0_20261104-175559

Metrics

Setmsepearsonrspearmanrr2above_wt_nabove_wt_spearmanrbudget_to_maxhit_rate_at_10mean_at_10max_at_10precision_at_10tie_share_at_10captured_at_10hit_rate_at_50mean_at_50max_at_50precision_at_50tie_share_at_50captured_at_50hit_rate_at_100mean_at_100max_at_100precision_at_100tie_share_at_100captured_at_100hit_rate_at_1pctmean_at_1pctmax_at_1pctprecision_at_1pcttie_share_at_1pctcaptured_at_1pct
train1.08260.91010.93460.814932275.00000.85021190.00001.00001.63331.93620.00000.00000.89431.00001.62182.09420.12000.00000.92821.00001.63182.09420.19000.00000.94670.99901.39622.45390.76280.00000.9859
validation3.4764-0.1634-0.1768-0.72275403.0000-0.01649597.00000.4000-0.55060.85010.00000.00000.19600.2800-0.83240.94760.00000.00000.08290.2500-1.18930.94760.00000.0000-0.08360.1990-1.22890.94760.00500.0000-0.1075
test3.01710.28020.22590.01711866.00000.062314509.00000.0000-1.9591-0.39200.00000.00000.01590.0400-1.88770.33480.00000.00000.04260.0500-1.72500.33480.00000.00000.10330.0896-1.54800.73430.01490.00000.1732

Loss per epoch

training validation

Config

name: reference_gb1_lr_plm_contiguousf0
task: dms
data:
  dataset: gb1
  encoding: one_hot,aa_index,plm,plm_sum
  split_dir: null
  split_scheme: contiguous
  split_fold: 0
model:
  name: lr
train:
  epochs: 300
  batch_size: 128
  learning_rate: 0.0001
  patience: 15
  min_delta: 1.0e-05
  seed: 7