pab1 · Sequence CNN
reference_pab1_cnn_contiguousf0_20261104-145714
Metrics
| Set | mse | pearsonr | spearmanr | r2 | above_wt_n | above_wt_spearmanr | budget_to_max | hit_rate_at_10 | mean_at_10 | max_at_10 | precision_at_10 | captured_at_10 | hit_rate_at_50 | mean_at_50 | max_at_50 | precision_at_50 | captured_at_50 | hit_rate_at_100 | mean_at_100 | max_at_100 | precision_at_100 | captured_at_100 | hit_rate_at_1pct | mean_at_1pct | max_at_1pct | precision_at_1pct | captured_at_1pct | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| train | 0.9861 | 0.8560 | 0.8080 | 0.6966 | 3428.0000 | -0.0151 | 13753.0000 | 0.8000 | 0.2082 | 0.6372 | 0.0000 | 0.6344 | 0.5000 | -0.0980 | 0.6938 | 0.0000 | 0.5759 | 0.4600 | -0.0956 | 0.8374 | 0.0200 | 0.6047 | 0.5152 | -0.0556 | 0.8532 | 0.0390 | 0.6643 | ||||
| validation | 4.5416 | -0.3926 | -0.4456 | -0.2653 | 196.0000 | -0.0211 | 885.0000 | 0.0000 | -3.0530 | -0.2229 | 0.0000 | 0.0000 | -0.3977 | 0.0400 | -2.9553 | 0.0916 | 0.0000 | 0.0000 | -0.3881 | 0.0300 | -2.9083 | 0.3256 | 0.0100 | 0.0000 | -0.3812 | 0.0833 | -2.6085 | 0.0916 | 0.0000 | 0.0000 | -0.2321 |
| test | 4.4915 | -0.0457 | -0.0385 | -0.2118 | 222.0000 | 0.0833 | 2510.0000 | 0.0000 | -2.7272 | -0.3741 | 0.0000 | 0.0000 | -0.0393 | 0.0000 | -2.7987 | -0.3741 | 0.0000 | 0.0000 | -0.0655 | 0.0100 | -2.7705 | 0.4375 | 0.0100 | 0.0000 | -0.0578 | 0.0000 | -2.8223 | -0.3741 | 0.0000 | 0.0000 | -0.0735 |
Loss per epoch
training
validation
Config
name: reference_pab1_cnn_contiguousf0
task: dms
data:
dataset: pab1
encoding: one_hot,aa_index
split_dir: null
split_scheme: contiguous
split_fold: 0
model:
name: cnn
conv:
- - 128
- 17
- - 128
- 17
- - 128
- 17
hidden:
- 100
dropout: 0.2
train:
epochs: 300
batch_size: 128
learning_rate: 0.0001
patience: 15
min_delta: 1.0e-05
seed: 7