pab1 · Sequence CNN
reference_pab1_cnn_contiguousf1_20261104-154359
Metrics
| Set | mse | pearsonr | spearmanr | r2 | above_wt_n | above_wt_spearmanr | budget_to_max | hit_rate_at_10 | mean_at_10 | max_at_10 | precision_at_10 | captured_at_10 | hit_rate_at_50 | mean_at_50 | max_at_50 | precision_at_50 | captured_at_50 | hit_rate_at_100 | mean_at_100 | max_at_100 | precision_at_100 | captured_at_100 | hit_rate_at_1pct | mean_at_1pct | max_at_1pct | precision_at_1pct | captured_at_1pct | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| train | 2.3905 | 0.4476 | 0.4629 | 0.1700 | 2849.0000 | 0.0057 | 13001.0000 | 0.0000 | -0.2724 | -0.0393 | 0.0000 | 0.4383 | 0.2600 | -0.1348 | 0.6979 | 0.0000 | 0.5467 | 0.1800 | -0.2002 | 0.6979 | 0.0100 | 0.5464 | 0.2020 | -0.2484 | 0.6979 | 0.0101 | 0.5556 | ||||
| validation | 4.5575 | -0.1902 | -0.1945 | -0.0730 | 475.0000 | 0.1324 | 1651.0000 | 0.0000 | -2.9663 | -0.3725 | 0.0000 | 0.0000 | -0.2398 | 0.0800 | -2.6125 | 0.5352 | 0.0200 | 0.0000 | -0.1278 | 0.0800 | -2.5416 | 0.5486 | 0.0300 | 0.0000 | -0.1054 | 0.0625 | -2.6888 | 0.5352 | 0.0208 | 0.0000 | -0.1555 |
| test | 3.6743 | -0.0774 | -0.0410 | -0.0236 | 196.0000 | 0.0050 | 1015.0000 | 0.0000 | -4.4534 | -3.3770 | 0.0000 | 0.0000 | -0.9487 | 0.0000 | -4.0805 | -1.0269 | 0.0000 | 0.0000 | -0.8663 | 0.0000 | -3.4627 | -0.2007 | 0.0000 | 0.0000 | -0.6252 | 0.0000 | -4.2995 | -2.3684 | 0.0000 | 0.0000 | -0.9247 |
Loss per epoch
training
validation
Config
name: reference_pab1_cnn_contiguousf1
task: dms
data:
dataset: pab1
encoding: one_hot,aa_index
split_dir: null
split_scheme: contiguous
split_fold: 1
model:
name: cnn
conv:
- - 128
- 17
- - 128
- 17
- - 128
- 17
hidden:
- 100
dropout: 0.2
train:
epochs: 300
batch_size: 128
learning_rate: 0.0001
patience: 15
min_delta: 1.0e-05
seed: 7