pab1 · Sequence CNN
reference_pab1_cnn_contiguousf3_20261104-162228
Metrics
| Set | mse | pearsonr | spearmanr | r2 | above_wt_n | above_wt_spearmanr | budget_to_max | hit_rate_at_10 | mean_at_10 | max_at_10 | precision_at_10 | captured_at_10 | hit_rate_at_50 | mean_at_50 | max_at_50 | precision_at_50 | captured_at_50 | hit_rate_at_100 | mean_at_100 | max_at_100 | precision_at_100 | captured_at_100 | hit_rate_at_1pct | mean_at_1pct | max_at_1pct | precision_at_1pct | captured_at_1pct | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| train | 0.3914 | 0.9497 | 0.9438 | 0.9013 | 1489.0000 | 0.1867 | 124.0000 | 0.6000 | 0.0726 | 0.5640 | 0.0000 | 0.7834 | 0.5600 | 0.0556 | 0.8505 | 0.0600 | 0.8244 | 0.6200 | 0.0593 | 0.8505 | 0.0900 | 0.8487 | 0.5981 | 0.0413 | 0.9945 | 0.1308 | 0.8688 | ||||
| validation | 1.9004 | -0.1440 | -0.0180 | -0.0188 | 931.0000 | -0.0425 | 3053.0000 | 0.0000 | -2.7184 | -0.5978 | 0.0000 | 0.0000 | -0.8457 | 0.0200 | -2.9385 | 0.6707 | 0.0200 | 0.0000 | -1.1017 | 0.0100 | -2.9651 | 0.6707 | 0.0100 | 0.0000 | -1.2060 | 0.0222 | -2.8830 | 0.6707 | 0.0222 | 0.0000 | -1.0587 |
| test | 3.4186 | -0.5216 | -0.3779 | -0.3471 | 383.0000 | 0.0308 | 2885.0000 | 0.0000 | -5.1381 | -4.0071 | 0.0000 | 0.0000 | -1.9716 | 0.0000 | -4.8426 | -1.7136 | 0.0000 | 0.0000 | -2.0962 | 0.0000 | -4.4541 | -0.1267 | 0.0000 | 0.0000 | -2.0285 | 0.0000 | -4.7809 | -1.7136 | 0.0000 | 0.0000 | -1.9755 |
Loss per epoch
training
validation
Config
name: reference_pab1_cnn_contiguousf3
task: dms
data:
dataset: pab1
encoding: one_hot,aa_index
split_dir: null
split_scheme: contiguous
split_fold: 3
model:
name: cnn
conv:
- - 128
- 17
- - 128
- 17
- - 128
- 17
hidden:
- 100
dropout: 0.2
train:
epochs: 300
batch_size: 128
learning_rate: 0.0001
patience: 15
min_delta: 1.0e-05
seed: 7