pab1 · Sequence CNN
reference_pab1_cnn_modulof2_20261104-163553
Metrics
| Set | mse | pearsonr | spearmanr | r2 | above_wt_n | above_wt_spearmanr | budget_to_max | hit_rate_at_10 | mean_at_10 | max_at_10 | precision_at_10 | tie_share_at_10 | captured_at_10 | hit_rate_at_50 | mean_at_50 | max_at_50 | precision_at_50 | tie_share_at_50 | captured_at_50 | hit_rate_at_100 | mean_at_100 | max_at_100 | precision_at_100 | tie_share_at_100 | captured_at_100 | hit_rate_at_1pct | mean_at_1pct | max_at_1pct | precision_at_1pct | tie_share_at_1pct | captured_at_1pct |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| train | 2.7276 | 0.5806 | 0.5995 | 0.2801 | 1717.0000 | 0.0056 | 5056.0000 | 0.3000 | -0.1853 | 0.3401 | 0.0000 | 0.0000 | 0.5759 | 0.1600 | -0.6212 | 0.3401 | 0.0000 | 0.0000 | 0.4749 | 0.1600 | -0.6318 | 0.4759 | 0.0000 | 0.0000 | 0.4975 | 0.1765 | -0.5763 | 0.8142 | 0.0196 | 0.0000 | 0.5361 |
| validation | 3.5403 | 0.0061 | 0.0574 | -0.0129 | 223.0000 | -0.0150 | 774.0000 | 0.0000 | -1.8707 | -0.3154 | 0.0000 | 0.0000 | -0.0829 | 0.1200 | -2.3426 | 0.4158 | 0.0200 | 0.0000 | -0.3165 | 0.1100 | -2.3708 | 0.4158 | 0.0400 | 0.0000 | -0.3489 | 0.0000 | -2.3310 | -0.1367 | 0.0000 | 0.0000 | -0.2856 |
| test | 3.9384 | -0.2020 | -0.0964 | -0.0971 | 116.0000 | 0.1674 | 458.0000 | 0.0000 | -5.0570 | -3.8592 | 0.0000 | 0.0000 | -1.2783 | 0.0000 | -4.4492 | -0.0641 | 0.0000 | 0.0000 | -1.1323 | 0.0200 | -3.8620 | 0.4475 | 0.0200 | 0.0000 | -0.9135 | 0.0000 | -5.0128 | -2.9892 | 0.0000 | 0.0000 | -1.2830 |
Loss per epoch
training
validation
Config
name: reference_pab1_cnn_modulof2
task: dms
data:
dataset: pab1
encoding: one_hot,aa_index
split_dir: null
split_scheme: modulo
split_fold: 2
model:
name: cnn
conv:
- - 128
- 17
- - 128
- 17
- - 128
- 17
hidden:
- 100
dropout: 0.2
train:
epochs: 300
batch_size: 128
learning_rate: 0.0001
patience: 15
min_delta: 1.0e-05
seed: 7