pab1 · Fully connected

reference_pab1_fc_plm_randomf1_20261104-180632

Metrics

Set	mse	pearsonr	spearmanr	r2	above_wt_n	above_wt_spearmanr	budget_to_max	hit_rate_at_10	mean_at_10	max_at_10	precision_at_10	captured_at_10	hit_rate_at_50	mean_at_50	max_at_50	precision_at_50	captured_at_50	hit_rate_at_100	mean_at_100	max_at_100	precision_at_100	captured_at_100	hit_rate_at_1pct	mean_at_1pct	max_at_1pct	precision_at_1pct	captured_at_1pct
train	0.3564	0.9523	0.9401	0.9046	2683.0000	0.0608	2666.0000	1.0000	0.3487	0.7331	0.0000	0.7681	0.8000	0.2080	0.8698	0.0400	0.7786	0.7100	0.1626	1.1615	0.0500	0.7912	0.6571	0.1056	1.1615	0.1184	0.8128
validation	0.4361	0.9417	0.9318	0.8851	935.0000	0.0429	975.0000	0.8000	0.1389	0.3836	0.0000	0.7043	0.6800	0.0795	0.5644	0.0200	0.7569	0.6900	0.0891	0.8662	0.1000	0.8009	0.6707	0.0942	0.8662	0.0488	0.7918
test	0.4056	0.9449	0.9319	0.8916	898.0000	0.0717	1505.0000	0.8000	0.1581	0.8601	0.1000	0.7113	0.7200	0.1037	0.8601	0.0400	0.7725	0.7200	0.0837	0.8601	0.0600	0.8025	0.7073	0.0702	0.8601	0.0488	0.7856

Loss per epoch

training validation

Config

name: reference_pab1_fc_plm_randomf1
task: dms
data:
  dataset: pab1
  encoding: one_hot,aa_index,plm,plm_sum
  split_dir: null
  split_scheme: random
  split_fold: 1
model:
  name: fcn
  hidden:
  - 100
  - 100
  - 100
  dropout: 0.2
train:
  epochs: 300
  batch_size: 128
  learning_rate: 0.001
  patience: 15
  min_delta: 1.0e-05
  seed: 7