Protein Engineering

ube4b · Sequence CNN

reference_ube4b_cnn_plm_contiguousf0_20261104-175823

Metrics

Setmsepearsonrspearmanrr2above_wt_nabove_wt_spearmanrbudget_to_maxhit_rate_at_10mean_at_10max_at_10precision_at_10tie_share_at_10captured_at_10hit_rate_at_50mean_at_50max_at_50precision_at_50tie_share_at_50captured_at_50hit_rate_at_100mean_at_100max_at_100precision_at_100tie_share_at_100captured_at_100hit_rate_at_1pctmean_at_1pctmax_at_1pctprecision_at_1pcttie_share_at_1pctcaptured_at_1pct
train3.02460.57790.53930.27564241.00000.3946628.00001.00004.70435.47720.00000.00000.72321.00004.30546.28320.10000.00000.77191.00004.10827.74370.26000.00000.80390.99533.71837.74370.39910.00000.8224
validation3.26540.29690.31930.0799458.0000-0.10412062.00000.5000-0.20561.03880.00000.00000.25760.4600-0.24243.46860.02000.00000.31310.4300-0.26783.46860.09000.00000.34970.57690.05623.46860.03850.00000.3419
test2.19380.22710.16590.03441218.00000.023244.00000.4000-0.21461.87170.00000.00000.11610.3600-0.30175.64210.02000.00000.12290.3200-0.54735.64210.02000.00000.07400.3256-0.46811.87170.00000.00000.0809

Loss per epoch

training validation

Config

name: reference_ube4b_cnn_plm_contiguousf0
task: dms
data:
  dataset: ube4b
  encoding: one_hot,aa_index,plm,plm_sum
  split_dir: null
  split_scheme: contiguous
  split_fold: 0
model:
  name: cnn
  conv:
  - - 128
    - 3
  - - 128
    - 3
  - - 128
    - 3
  - - 128
    - 3
  - - 128
    - 3
  hidden:
  - 100
  dropout: 0.2
train:
  epochs: 300
  batch_size: 128
  learning_rate: 0.0001
  patience: 15
  min_delta: 1.0e-05
  seed: 7