ube4b · Sequence CNN
reference_ube4b_cnn_plm_randomf4_20261105-041919
Metrics
| Set | mse | pearsonr | spearmanr | r2 | above_wt_n | above_wt_spearmanr | budget_to_max | hit_rate_at_10 | mean_at_10 | max_at_10 | precision_at_10 | tie_share_at_10 | captured_at_10 | hit_rate_at_50 | mean_at_50 | max_at_50 | precision_at_50 | tie_share_at_50 | captured_at_50 | hit_rate_at_100 | mean_at_100 | max_at_100 | precision_at_100 | tie_share_at_100 | captured_at_100 | hit_rate_at_1pct | mean_at_1pct | max_at_1pct | precision_at_1pct | tie_share_at_1pct | captured_at_1pct |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| train | 2.0163 | 0.6859 | 0.6499 | 0.4689 | 12414.0000 | 0.4585 | 5.0000 | 1.0000 | 6.2638 | 9.1845 | 0.1000 | 0.0000 | 0.8430 | 1.0000 | 5.3261 | 9.1845 | 0.3400 | 0.0000 | 0.8454 | 1.0000 | 4.8340 | 9.1845 | 0.3400 | 0.0000 | 0.8369 | 0.9915 | 3.9333 | 9.1845 | 0.5475 | 0.0000 | 0.8856 |
| validation | 2.1547 | 0.6510 | 0.6162 | 0.4236 | 4174.0000 | 0.4185 | 125.0000 | 1.0000 | 5.1183 | 7.8259 | 0.1000 | 0.0000 | 0.7730 | 1.0000 | 4.6675 | 7.8259 | 0.3400 | 0.0000 | 0.8429 | 0.9900 | 4.1126 | 8.0483 | 0.4400 | 0.0000 | 0.8364 | 0.9898 | 3.7465 | 8.6246 | 0.5635 | 0.0000 | 0.8557 |
| test | 2.1870 | 0.6568 | 0.6205 | 0.4312 | 4163.0000 | 0.4579 | 61.0000 | 1.0000 | 5.0758 | 7.7437 | 0.2000 | 0.0000 | 0.7790 | 1.0000 | 4.6060 | 7.7437 | 0.3400 | 0.0000 | 0.8386 | 1.0000 | 4.4439 | 9.1537 | 0.4900 | 0.0000 | 0.8831 | 0.9898 | 3.7825 | 9.1537 | 0.5076 | 0.0000 | 0.8568 |
Loss per epoch
training
validation
Config
name: reference_ube4b_cnn_plm_randomf4
task: dms
data:
dataset: ube4b
encoding: one_hot,aa_index,plm,plm_sum
split_dir: null
split_scheme: random
split_fold: 4
model:
name: cnn
conv:
- - 128
- 3
- - 128
- 3
- - 128
- 3
- - 128
- 3
- - 128
- 3
hidden:
- 100
dropout: 0.2
train:
epochs: 300
batch_size: 128
learning_rate: 0.0001
patience: 15
min_delta: 1.0e-05
seed: 7