ube4b · Fully connected
reference_ube4b_fc_plm_contiguousf2_20261104-184756
Metrics
| Set | mse | pearsonr | spearmanr | r2 | above_wt_n | above_wt_spearmanr | budget_to_max | hit_rate_at_10 | mean_at_10 | max_at_10 | precision_at_10 | tie_share_at_10 | captured_at_10 | hit_rate_at_50 | mean_at_50 | max_at_50 | precision_at_50 | tie_share_at_50 | captured_at_50 | hit_rate_at_100 | mean_at_100 | max_at_100 | precision_at_100 | tie_share_at_100 | captured_at_100 | hit_rate_at_1pct | mean_at_1pct | max_at_1pct | precision_at_1pct | tie_share_at_1pct | captured_at_1pct |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| train | 2.0202 | 0.5701 | 0.5688 | 0.3164 | 9957.0000 | 0.1619 | 5289.0000 | 1.0000 | 2.8503 | 4.0867 | 0.0000 | 0.0000 | 0.5513 | 0.9200 | 2.0574 | 4.5416 | 0.0200 | 0.0000 | 0.5243 | 0.9100 | 1.7973 | 4.5416 | 0.0500 | 0.0000 | 0.5257 | 0.8879 | 1.3583 | 5.5143 | 0.1379 | 0.0000 | 0.5539 |
| validation | 3.3531 | 0.3273 | 0.3491 | 0.1067 | 323.0000 | -0.0988 | 551.0000 | 0.4000 | -0.1397 | 0.7848 | 0.0000 | 0.0000 | 0.2643 | 0.3200 | -0.5940 | 1.3241 | 0.0000 | 0.0000 | 0.2502 | 0.3100 | -0.4928 | 3.8792 | 0.0500 | 0.0000 | 0.3111 | 0.3600 | -0.4174 | 1.1537 | 0.0000 | 0.0000 | 0.2529 |
| test | 5.1715 | 0.3795 | 0.4067 | 0.1083 | 88.0000 | 0.0253 | 54.0000 | 0.6000 | 0.1788 | 1.6400 | 0.0000 | 0.0000 | 0.2817 | 0.3600 | -0.0373 | 4.5327 | 0.1600 | 0.0000 | 0.3359 | 0.3400 | -0.0904 | 5.7047 | 0.3900 | 0.0000 | 0.4491 | 0.7500 | -0.0658 | 0.1707 | 0.0000 | 0.0000 | 0.2166 |
Loss per epoch
training
validation
Config
name: reference_ube4b_fc_plm_contiguousf2 task: dms data: dataset: ube4b encoding: one_hot,aa_index,plm,plm_sum split_dir: null split_scheme: contiguous split_fold: 2 model: name: fcn hidden: - 100 - 100 - 100 dropout: 0.2 train: epochs: 300 batch_size: 64 learning_rate: 0.0001 patience: 15 min_delta: 1.0e-05 seed: 7