ube4b · Fully connected

reference_ube4b_fc_randomf2_20261104-162359

Metrics

Set	mse	pearsonr	spearmanr	r2	above_wt_n	above_wt_spearmanr	budget_to_max	hit_rate_at_10	mean_at_10	max_at_10	precision_at_10	captured_at_10	hit_rate_at_50	mean_at_50	max_at_50	precision_at_50	captured_at_50	hit_rate_at_100	mean_at_100	max_at_100	precision_at_100	captured_at_100	hit_rate_at_1pct	mean_at_1pct	max_at_1pct	precision_at_1pct	captured_at_1pct
train	2.0783	0.6738	0.6358	0.4517	12472.0000	0.4580	79.0000	1.0000	6.4972	8.6246	0.4000	0.8619	1.0000	5.3045	8.6246	0.2800	0.8458	1.0000	5.0295	9.1537	0.4000	0.8614	0.9966	3.9484	9.1537	0.5712	0.8873
validation	2.1778	0.6518	0.6144	0.4239	4203.0000	0.4416	27.0000	1.0000	5.3471	6.7153	0.3000	0.8542	1.0000	4.7038	6.9328	0.4200	0.8691	0.9900	4.1887	6.9328	0.5100	0.8614	0.9949	3.7525	6.9328	0.5178	0.8656
test	2.2363	0.6453	0.6035	0.4147	4076.0000	0.4438	1.0000	1.0000	5.9314	9.1845	0.2000	0.8291	1.0000	4.8339	9.1845	0.4600	0.8570	0.9800	4.2952	9.1845	0.4300	0.8514	0.9645	3.7632	9.1845	0.5685	0.8474

Loss per epoch

training validation

Config

name: reference_ube4b_fc_randomf2
task: dms
data:
  dataset: ube4b
  encoding: one_hot,aa_index
  split_dir: null
  split_scheme: random
  split_fold: 2
model:
  name: fcn
  hidden:
  - 100
  - 100
  - 100
  dropout: 0.2
train:
  epochs: 300
  batch_size: 64
  learning_rate: 0.0001
  patience: 15
  min_delta: 1.0e-05
  seed: 7