ube4b · Graph CNN
reference_ube4b_gcn_plm_contiguousf4_20261105-043854
Metrics
| Set | mse | pearsonr | spearmanr | r2 | above_wt_n | above_wt_spearmanr | budget_to_max | hit_rate_at_10 | mean_at_10 | max_at_10 | precision_at_10 | tie_share_at_10 | captured_at_10 | hit_rate_at_50 | mean_at_50 | max_at_50 | precision_at_50 | tie_share_at_50 | captured_at_50 | hit_rate_at_100 | mean_at_100 | max_at_100 | precision_at_100 | tie_share_at_100 | captured_at_100 | hit_rate_at_1pct | mean_at_1pct | max_at_1pct | precision_at_1pct | tie_share_at_1pct | captured_at_1pct |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| train | 3.8604 | 0.3069 | 0.3432 | 0.0939 | 2870.0000 | -0.0129 | 14282.0000 | 0.3000 | -0.3963 | 0.8717 | 0.0000 | 0.0000 | 0.1594 | 0.5600 | 0.0570 | 4.6530 | 0.0000 | 0.0000 | 0.2431 | 0.4300 | -0.1893 | 4.6530 | 0.0100 | 0.0000 | 0.2271 | 0.3684 | -0.3307 | 4.6530 | 0.0058 | 0.0000 | 0.2221 |
| validation | 2.2870 | 0.2261 | 0.1656 | -0.0066 | 1218.0000 | 0.0198 | 66.0000 | 0.4000 | -0.3629 | 1.8717 | 0.0000 | 0.0000 | 0.0875 | 0.4000 | -0.4064 | 1.8717 | 0.0000 | 0.0000 | 0.0979 | 0.3300 | -0.4521 | 5.6421 | 0.0200 | 0.0000 | 0.1002 | 0.3721 | -0.5067 | 1.8717 | 0.0000 | 0.0000 | 0.0719 |
| test | 2.3775 | 0.3833 | 0.3292 | 0.1462 | 933.0000 | -0.0649 | 1117.0000 | 0.2000 | -1.1693 | 0.3015 | 0.0000 | 0.0000 | -0.0137 | 0.2600 | -0.8230 | 1.5456 | 0.0000 | 0.0000 | 0.0661 | 0.2700 | -0.7063 | 1.5456 | 0.0000 | 0.0000 | 0.1096 | 0.2368 | -0.8952 | 1.4470 | 0.0000 | 0.0000 | 0.0460 |
Loss per epoch
training
validation
Config
name: reference_ube4b_gcn_plm_contiguousf4 task: dms data: dataset: ube4b encoding: one_hot,aa_index,plm,plm_sum split_dir: null graph_threshold: 7 split_scheme: contiguous split_fold: 4 model: name: gcn filters: - 128 - 128 - 128 hidden: - 100 dropout: 0.2 train: epochs: 300 batch_size: 128 learning_rate: 0.0001 patience: 15 min_delta: 1.0e-05 seed: 7