ube4b · Graph CNN
reference_ube4b_gcn_plm_randomf0_20261104-174858
Metrics
| Set | mse | pearsonr | spearmanr | r2 | above_wt_n | above_wt_spearmanr | budget_to_max | hit_rate_at_10 | mean_at_10 | max_at_10 | precision_at_10 | tie_share_at_10 | captured_at_10 | hit_rate_at_50 | mean_at_50 | max_at_50 | precision_at_50 | tie_share_at_50 | captured_at_50 | hit_rate_at_100 | mean_at_100 | max_at_100 | precision_at_100 | tie_share_at_100 | captured_at_100 | hit_rate_at_1pct | mean_at_1pct | max_at_1pct | precision_at_1pct | tie_share_at_1pct | captured_at_1pct |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| train | 1.9816 | 0.6949 | 0.6609 | 0.4806 | 12442.0000 | 0.4773 | 3.0000 | 1.0000 | 6.5902 | 9.1845 | 0.3000 | 0.0000 | 0.8579 | 1.0000 | 5.5735 | 9.1845 | 0.3200 | 0.0000 | 0.8726 | 1.0000 | 5.1349 | 9.1845 | 0.3700 | 0.0000 | 0.8736 | 0.9966 | 3.9754 | 9.1845 | 0.5610 | 0.0000 | 0.8909 |
| validation | 2.1561 | 0.6569 | 0.6172 | 0.4309 | 4135.0000 | 0.4444 | 354.0000 | 1.0000 | 5.2073 | 6.5758 | 0.1000 | 0.0000 | 0.8187 | 1.0000 | 4.4013 | 6.5758 | 0.3600 | 0.0000 | 0.8156 | 1.0000 | 4.1640 | 6.5758 | 0.4100 | 0.0000 | 0.8466 | 0.9797 | 3.8087 | 6.5758 | 0.5228 | 0.0000 | 0.8662 |
| test | 2.1592 | 0.6504 | 0.6140 | 0.4224 | 4174.0000 | 0.4198 | 120.0000 | 1.0000 | 5.2018 | 7.8259 | 0.1000 | 0.0000 | 0.7829 | 1.0000 | 4.6334 | 8.0483 | 0.3400 | 0.0000 | 0.8382 | 0.9900 | 4.2857 | 8.0483 | 0.4900 | 0.0000 | 0.8626 | 0.9898 | 3.7833 | 8.6246 | 0.5584 | 0.0000 | 0.8618 |
Loss per epoch
training
validation
Config
name: reference_ube4b_gcn_plm_randomf0 task: dms data: dataset: ube4b encoding: one_hot,aa_index,plm,plm_sum split_dir: null graph_threshold: 7 split_scheme: random split_fold: 0 model: name: gcn filters: - 128 - 128 - 128 hidden: - 100 dropout: 0.2 train: epochs: 300 batch_size: 128 learning_rate: 0.0001 patience: 15 min_delta: 1.0e-05 seed: 7