Protein Engineering

ube4b · Linear

reference_ube4b_lr_modulof2_20261104-163808

Metrics

Setmsepearsonrspearmanrr2above_wt_nabove_wt_spearmanrbudget_to_maxhit_rate_at_10mean_at_10max_at_10precision_at_10tie_share_at_10captured_at_10hit_rate_at_50mean_at_50max_at_50precision_at_50tie_share_at_50captured_at_50hit_rate_at_100mean_at_100max_at_100precision_at_100tie_share_at_100captured_at_100hit_rate_at_1pctmean_at_1pctmax_at_1pctprecision_at_1pcttie_share_at_1pctcaptured_at_1pct
train2.39560.52900.54290.27585464.00000.25604898.00000.90003.54456.12790.10000.00000.64110.96002.92286.12790.16000.00000.67320.97002.63736.12790.17000.00000.69100.90681.99996.12790.31540.00000.6818
validation3.2194-0.0267-0.0285-0.0630418.0000-0.0250520.00000.1000-1.35380.23420.00000.0000-0.01160.2800-1.09983.01670.02000.00000.05510.2000-1.51773.01670.06000.0000-0.07020.1111-1.73881.00920.00000.0000-0.1013
test5.1679-0.1287-0.1220-0.0746819.0000-0.08743076.00000.1000-1.51521.01460.00000.0000-0.05370.1600-1.59502.74940.00000.0000-0.07570.1800-1.65512.74940.00000.0000-0.09470.1875-1.61332.74940.00000.0000-0.0749

Loss per epoch

training validation

Config

name: reference_ube4b_lr_modulof2
task: dms
data:
  dataset: ube4b
  encoding: one_hot,aa_index
  split_dir: null
  split_scheme: modulo
  split_fold: 2
model:
  name: lr
train:
  epochs: 300
  batch_size: 64
  learning_rate: 0.0001
  patience: 15
  min_delta: 1.0e-05
  seed: 7