Protein Engineering

ube4b · Linear

reference_ube4b_lr_plm_modulof3_20261105-040337

Metrics

Setmsepearsonrspearmanrr2above_wt_nabove_wt_spearmanrbudget_to_maxhit_rate_at_10mean_at_10max_at_10precision_at_10tie_share_at_10captured_at_10hit_rate_at_50mean_at_50max_at_50precision_at_50tie_share_at_50captured_at_50hit_rate_at_100mean_at_100max_at_100precision_at_100tie_share_at_100captured_at_100hit_rate_at_1pctmean_at_1pctmax_at_1pctprecision_at_1pcttie_share_at_1pctcaptured_at_1pct
train2.34150.63950.62240.40777842.00000.512144.00001.00005.15306.71530.10000.00000.72021.00004.80849.15370.32000.00000.79310.97004.58169.15370.41000.00000.81880.98274.04109.15370.54760.00000.8641
validation3.03090.35450.37460.1243318.0000-0.0840156.00000.3000-1.54780.81180.00000.00000.01020.3400-0.99352.74200.02000.00000.14790.3200-0.92123.42010.04000.00000.19460.3333-1.27640.81180.00000.00000.0652
test2.91270.27510.30190.0383418.0000-0.15141631.00000.2000-1.00331.14250.00000.00000.06310.2800-0.51722.91720.04000.00000.21590.2900-0.68552.91720.04000.00000.19730.2222-0.75071.14250.00000.00000.1264

Loss per epoch

training validation

Config

name: reference_ube4b_lr_plm_modulof3
task: dms
data:
  dataset: ube4b
  encoding: one_hot,aa_index,plm,plm_sum
  split_dir: null
  split_scheme: modulo
  split_fold: 3
model:
  name: lr
train:
  epochs: 300
  batch_size: 64
  learning_rate: 0.0001
  patience: 15
  min_delta: 1.0e-05
  seed: 7