Protein Engineering

ube4b · Linear

reference_ube4b_lr_plm_modulof4_20261105-043152

Metrics

Setmsepearsonrspearmanrr2above_wt_nabove_wt_spearmanrbudget_to_maxhit_rate_at_10mean_at_10max_at_10precision_at_10tie_share_at_10captured_at_10hit_rate_at_50mean_at_50max_at_50precision_at_50tie_share_at_50captured_at_50hit_rate_at_100mean_at_100max_at_100precision_at_100tie_share_at_100captured_at_100hit_rate_at_1pctmean_at_1pctmax_at_1pctprecision_at_1pcttie_share_at_1pctcaptured_at_1pct
train2.39320.62550.61630.38286783.00000.469729.00001.00005.34507.82590.10000.00000.75601.00004.79329.15370.26000.00000.81410.97004.28319.15370.38000.00000.80690.97023.88989.15370.53970.00000.8578
validation3.08630.25720.25620.0542645.00000.0157396.00000.2000-1.24470.25100.00000.0000-0.00300.3400-0.54012.10100.00000.00000.15120.2800-0.72852.10100.02000.00000.12560.3214-0.69151.92790.00000.00000.1079
test3.07160.35290.37320.1126318.0000-0.0820159.00000.4000-1.42100.81180.00000.00000.03270.3200-1.00032.74200.02000.00000.14620.3200-0.90873.42010.04000.00000.19810.3333-1.27640.81180.00000.00000.0652

Loss per epoch

training validation

Config

name: reference_ube4b_lr_plm_modulof4
task: dms
data:
  dataset: ube4b
  encoding: one_hot,aa_index,plm,plm_sum
  split_dir: null
  split_scheme: modulo
  split_fold: 4
model:
  name: lr
train:
  epochs: 300
  batch_size: 64
  learning_rate: 0.0001
  patience: 15
  min_delta: 1.0e-05
  seed: 7