Protein Engineering

ube4b · Linear

reference_ube4b_lr_plm_randomf0_20261104-174921

Metrics

Setmsepearsonrspearmanrr2above_wt_nabove_wt_spearmanrbudget_to_maxhit_rate_at_10mean_at_10max_at_10precision_at_10tie_share_at_10captured_at_10hit_rate_at_50mean_at_50max_at_50precision_at_50tie_share_at_50captured_at_50hit_rate_at_100mean_at_100max_at_100precision_at_100tie_share_at_100captured_at_100hit_rate_at_1pctmean_at_1pctmax_at_1pctprecision_at_1pcttie_share_at_1pctcaptured_at_1pct
train2.39830.60950.60650.371412442.00000.45701.00001.00005.88399.18450.20000.00000.78220.96004.72649.18450.28000.00000.76680.98004.58409.18450.34000.00000.80010.97123.72369.18450.53390.00000.8492
validation2.48470.58750.58710.34414135.00000.4450199.00001.00004.50246.57580.10000.00000.73160.96003.85556.57580.38000.00000.73910.97003.88436.57580.45000.00000.80420.97463.67506.57580.50250.00000.8440
test2.47450.58230.58560.33814174.00000.420112.00001.00004.93297.82590.10000.00000.75110.98004.45118.62460.38000.00000.81290.97004.04308.62460.50000.00000.82590.95943.52218.62460.54820.00000.8185

Loss per epoch

training validation

Config

name: reference_ube4b_lr_plm_randomf0
task: dms
data:
  dataset: ube4b
  encoding: one_hot,aa_index,plm,plm_sum
  split_dir: null
  split_scheme: random
  split_fold: 0
model:
  name: lr
train:
  epochs: 300
  batch_size: 64
  learning_rate: 0.0001
  patience: 15
  min_delta: 1.0e-05
  seed: 7