Protein Engineering

ube4b · Linear

reference_ube4b_lr_randomf4_20261104-165503

Metrics

Setmsepearsonrspearmanrr2above_wt_nabove_wt_spearmanrbudget_to_maxhit_rate_at_10mean_at_10max_at_10precision_at_10tie_share_at_10captured_at_10hit_rate_at_50mean_at_50max_at_50precision_at_50tie_share_at_50captured_at_50hit_rate_at_100mean_at_100max_at_100precision_at_100tie_share_at_100captured_at_100hit_rate_at_1pctmean_at_1pctmax_at_1pctprecision_at_1pcttie_share_at_1pctcaptured_at_1pct
train2.40320.60590.59950.367012414.00000.45072.00001.00006.33299.18450.20000.00000.85050.96004.86569.18450.30000.00000.78770.96004.46859.18450.37000.00000.78800.96613.59969.18450.50000.00000.8304
validation2.48380.57960.57810.33564174.00000.421112.00001.00004.54327.82590.10000.00000.70491.00004.48818.62460.36000.00000.81800.97003.77678.62460.42000.00000.78560.96453.50988.62460.51270.00000.8165
test2.47170.59770.59090.35724163.00000.464137.00001.00005.32497.74370.20000.00000.80890.94003.75599.15370.28000.00000.72010.95003.68299.15370.38000.00000.76830.96453.51679.15370.48220.00000.8129

Loss per epoch

training validation

Config

name: reference_ube4b_lr_randomf4
task: dms
data:
  dataset: ube4b
  encoding: one_hot,aa_index
  split_dir: null
  split_scheme: random
  split_fold: 4
model:
  name: lr
train:
  epochs: 300
  batch_size: 64
  learning_rate: 0.0001
  patience: 15
  min_delta: 1.0e-05
  seed: 7